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Nature Methods, May 2021

A pairwise distance distribution correction (DDC) algorithm to eliminate blinking-caused artifacts in SMLM

Christopher H. Bohrer, Xinxing Yang, Shreyasi Thakur, Xiaoli Weng, Brian Tenner, Ryan McQuillen, Brian Ross, Matthew Wooten, Xin Chen, Jin Zhang, Elijah Roberts, Melike Lakadamyali & Jie Xiao

Tags
  • dSTORM
  • SMLM

J Extracell Vesicles, May 2021

Urinary extracellular vesicles: A position paper by the Urine Task Force of the International Society for Extracellular Vesicles

Erdbrügger U, Blijdorp CJ, Bijnsdorp IV, Borràs FE, Burger D, Bussolati B, Byrd JB, Clayton A, Dear JW, Falcón-Pérez JM, Grange C, Hill AF, Holthöfer H, Hoorn EJ, Jenster G, Jimenez CR, Junker K, Klein J, Knepper MA, Koritzinsky EH, Luther JM, Lenassi M, Leivo J, Mertens I, Musante L, Oeyen E, Puhka M, van Royen ME, Sánchez C, Soekmadji C, Thongboonkerd V, van Steijn V, Verhaegh G, Webber JP, Witwer K, Yuen PST, Zheng L, Llorente A, Martens-Uzunova ES.

Tags
  • Extracellular vesicles
  • dSTORM

bioRxiv, May 2021

High-precision mapping of nuclear pore-chromatin interactions reveals new principles of genome organization at the nuclear envelope

Martin W Hetzer, swati tyagi, Fei Chen, Jialiang Huang

Tags
  • dSTORM

Int. J. Mol. Sci., May 2021

Mesenchymal Stem Cell-Derived Extracellular Vesicles Protect Human Corneal Endothelial Cells from Endoplasmic Reticulum Stress-Mediated Apoptosis

Buono, Lola; Scalabrin, Simona; De Iuliis, Marco; Tanzi, Adele; Grange, Cristina; Tapparo, Marta; Nuzzi, Raffaele; Bussolati, Benedetta.

Tags
  • Extracellular vesicles
  • dSTORM

The EMBO journal, May 2021

Cellular stress promotes NOD1/2-dependent inflammation via the endogenous metabolite sphingosine-1-phosphate

Gang Pei Joanna Zyla Lichun He Pedro Moura‐Alves Heidrun Steinle Philippe Saikali Laura Lozza Natalie Nieuwenhuizen January Weiner Hans‐Joachim Mollenkopf Kornelia Ellwanger Christine Arnold Mojie Duan Yulia Dagil Mikhail Pashenkov Ivo Gomperts Boneca Thomas A Kufer Anca Dorhoi Stefan HE Kaufmann

Tags
  • dSTORM
  • Single-particle tracking

biorxiv, May 2021

Adherence to minimal experimental requirements for defining extracellular vesicles and their functions: a systematic review

Rodolphe Poupardin, Martin Wolf, Dirk Strunk

Tags
  • Extracellular vesicles
  • dSTORM

biorxiv, April 2021

Chemo-Mechanical Cues Modulate Nano-Scale Chromatin Organization in Healthy and Diseased Connective Tissue Cells

Su-Jin Heo, Shreyasi Thakur, Xingyu Chen, Claudia Loebel, Boao Xia, Rowena McBeath, Jason A. Burdick, Vivek B. Shenoy, Robert L. Mauck, Melike Lakadamyali

Tags
  • dSTORM

International Journal of Molecular Sciences, April 2021

Hypoxic Conditions Promote the Angiogenic Potential of Human Induced Pluripotent Stem Cell-Derived Extracellular Vesicles

Andrade AC, Wolf M, Binder H-M, Gomes FG, Manstein F, Ebner-Peking P, Poupardin R, Zweigerdt R, Schallmoser K, Strunk D.

Tags
  • Extracellular vesicles
  • dSTORM

Nucleic Acids Research, April 2021

Suppression of liquid–liquid phase separation by 1,6-hexanediol partially compromises the 3D genome organization in living cells

Sergey V Ulianov, Artem K Velichko, Mikhail D Magnitov, Artem V Luzhin, Arkadiy K Golov, Natalia Ovsyannikova, Igor I Kireev, Alexey S Gavrikov, Alexander S Mishin, Azat K Garaev, Alexander V Tyakht, Alexey A Gavrilov, Omar L Kantidze, Sergey V Razin

Tags
  • dSTORM

CRC Press, December 2020

Imaging from Cells to Animals In Vivo

Xavier Intes, Margarida Barroso

Tags
  • dSTORM
  • SMLM

American Association for Cancer Research, January 2021

Mesenchymal stem cell-secreted extracellular vesicles instruct stepwise dedifferentiation of breast cancer cells into dormancy at the bone marrow perivascular region

Oleta A. Sandiford, Robert J. Donnelly, Markos El-Far, Lisa M. Burgmeyer, Garima Sinha, Sri Harika Pamarthi, Lauren S. Sherman, Alejandra I. Ferrer, Dariana E. DeVore, Shyam A. Patel, Yahaira Naaldijk, Sara Alonso, Pradeep Barak, Margarette Bryan, Nicholas M. Ponzio, Ramaswamy Narayanan, Jean-Pierre Etchegaray, Rakesh Kumar and Pranela Rameshwar

Tags
  • Extracellular vesicles
  • dSTORM
  • Live imaging

bioRxiv preprint, February 2021

Dynamics and nanoscale organization of the postsynaptic endocytic zone at excitatory synapses

Lisa A.E. Catsburg, Manon Westra, Annemarie M. L. van Schaik, Harold D. MacGillavry

Tags
  • Neuroscience
  • dSTORM